Skip to contents

Molecular markers data and genomic relatedness matrix of Australian lizards

lizard_markers.Rd

Molecular markers data and genomic relatedness matrix of Australian lizards

Usage

lizard_markers

lizard_GRM

Format

lizard_markers

A data frame with 261 rows and 8438 columns:

  • gen individual identifier, equivalent to liz_id in lizard_phenotypes

  • 8437 genetic markers scored as 0, 2, 1 (see Details)

lizard_GRM

A matrix array with 261 rows and 261 columns where each row/column represents a genotype

Source

https://osf.io/hjkxd/?view_only=12a6b6010567474fac9fecd54472aa3d

Details

See ?snpReady::G.matrix for how GRM was computed. The biallelic marker \(M_iw\) for the ith genotype and the \(w\)th marker with alleles \(A_1\) (i.e. the reference allele) and \(A_2\) was coded as:

  • 0 for \(A_1\) \(A_1\),

  • 1 for \(A_1\) \(A_2\) and \(A_2\) \(A_1\)

  • 2 for \(A_2\) \(A_2\)

References

Kar, F., Nakagawa, S. and Noble, D.W.A. (2024) “Heritability and developmental plasticity of growth in an oviparous lizard,” Heredity, 132(2), pp. 67–76. Available at: https://doi.org/10.1038/s41437-023-00660-3.